This blog is to solve the problem in the above comics. I hope it will be useful to you. (Search for your answers in the search box)bioinfocore
Latest in bioinformatics
This comes with a massive klaxon COI (I’m a long established consultant to ONT and small scale shareholder) but great to see Q20 runs like this in the wild… this is a 10-fold drop in raw read error
I still remember the "old" @nanopore days with modal error-rates of 15-20 %. Here, I am getting approximately 10 Gb (got 18 Gb / Q14-ish from R9.4.1) from my first R10.4 flow cell and a modal q-score of approx. 18 (ca. 1.5 % error rate). Not bad for a first R10.4 Q20EA run...
NEW Perspective! Sohrab P. Shah et al. discuss the integration of multimodal data by #MachineLearning models to advance the prognosis and treatment management of patients with cancer.
@natrescancer @sloan_kettering #CancerTherapy #ArtificalIntelligence
@michaelhoffman @lh3lh3 @nomad421 I’ve been wondering for years why ASCII 0x1c-0x1f are constantly ignored as delimiters by both formats and viewers… We could have had sane C/TSV, FASTQ, even GFF/GTF parsing. Sadly, last I checked, viewers treat them like NUL. Four more characters byte the dust.
Applications are now open for the AACR 2022 Science Policy Fellowship, a two-year paid position based in Washington, DC, for early-career scientists interested in engaging in the policy-making process at the national level. Deadline: Nov 24. Learn more: https://t.co/f6b1cHkzFX
We hope our #WCM colleagues can join us in one hour for the WCM ICB talk, "Microbial Cysteine Degradation Drives Cryptic Sulfide Redox Chemistry in the Gut,” by Dr. Libusha Kelly (@microbegrrl) @EinsteinMed and hosted by @ElementoLab and @dbetel
Don't miss #WCM's Inst. for Computational Biomed. talk "Microbial Cysteine Degradation Drives Cryptic Sulfide Redox Chemistry in the Gut,” by Dr. Libusha Kelly (@microbegrrl) @EinsteinMed hosted by @ElementoLab and @dbetel
Oct. 25th 11 AM. Zoom mtg. info. emailed to #WCM staff.
See you at the #ASTRO21 #TweetUp! Today at the ASK ASTRO Booth 11 am - 12 pm!
Anyone who aided in an attack on Congress should not be permitted to be a Member of Congress. Period. https://t.co/Lt9eKE0BXf
EXCLUSIVE: Jan. 6 Protest Organizers Say They Participated in ‘Dozens’ of Planning Meetings With Members of Congress and White House Staff https://t.co/HfpcnB1TwN
🚨 Breaking #ASTRO21 News - A new study from @CJTsaiMDPhD found that high-dose radiation therapy administered alongside systemic therapy in patients with metastatic non-small cell lung cancer can help extend progression free survival. https://t.co/2eOpfzkQpI
In a Nature Portfolio Ecology & Evolution community post, Fabien Lafuma describes how complex teeth have evolved in mammals. #BehindThePaper https://t.co/jctEtrCYm1
A therapy targeting the acidic environment of cancer cells may improve immunotherapy, according to results presented at the AACR-NCI-EORTC Conference on Molecular Targets and Cancer Therapeutics: https://t.co/BRD8Z2D5cK #Targets21
Fonts output into pdf as text, not shape, to be recognized in Illustrator: Change fonts style for all, change the default: Change fonts style for labels, tick marks, and titles: (for each plot, not changing the default) Change legend font style: (for each plot, not changing the default) Source:https://jonathansoma.com/lede/data-studio/matplotlib/exporting-from-matplotlib-to-open-in-adobe-illustrator/https://stackoverflow.com/questions/20753782/default-fonts-in-seaborn-statistical-data-visualization-in-ipythonhttps://stackoverflow.com/questions/47112522/matplotlib-how-to-set-legends-font-typehttps://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.legend.html
FS and OFS specify the input/output separator Source:https://unix.stackexchange.com/questions/344541/easiest-way-to-rearrange-columns-and-manipulate-text-file
The most straightforward way is using CrossMap. Taking from hg19 to hg38 as example: genome liftover chain files can be downloaded here: http://hgdownload.cse.ucsc.edu/goldenpath/hg19/liftOver/ (change according to your needs) It is suggested to always use ‘-a’ option according to the CrossMap website. Source:http://crossmap.sourceforge.net/#convert-bam-cram-sam-format-files
In the second notebook: To list and delete the stored variable: Source:https://stackoverflow.com/questions/35935670/share-variables-between-different-jupyter-notebookshttps://ipython.org/ipython-doc/rel-0.12/config/extensions/storemagic.html
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