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Wisdom of the Ancients | from xkcd.com

This blog is to solve the problem in the above comics. I hope it will be useful to you. (Search for your answers in the search box)

bioinfocore

Latest in bioinformatics

NEW Perspective! Sohrab P. Shah et al. discuss the integration of multimodal data by #MachineLearning models to advance the prognosis and treatment management of patients with cancer.

🛎️https://t.co/0DzwAKTuUy

@natrescancer @sloan_kettering #CancerTherapy #ArtificalIntelligence

@michaelhoffman @lh3lh3 @nomad421 I’ve been wondering for years why ASCII 0x1c-0x1f are constantly ignored as delimiters by both formats and viewers… We could have had sane C/TSV, FASTQ, even GFF/GTF parsing. Sadly, last I checked, viewers treat them like NUL. Four more characters byte the dust.

Applications are now open for the AACR 2022 Science Policy Fellowship, a two-year paid position based in Washington, DC, for early-career scientists interested in engaging in the policy-making process at the national level. Deadline: Nov 24. Learn more: https://t.co/f6b1cHkzFX

🚨 Breaking #ASTRO21 News - A new study from @CJTsaiMDPhD found that high-dose radiation therapy administered alongside systemic therapy in patients with metastatic non-small cell lung cancer can help extend progression free survival. https://t.co/2eOpfzkQpI

@ASTRO_org #RadOnc

In a Nature Portfolio Ecology & Evolution community post, Fabien Lafuma describes how complex teeth have evolved in mammals. #BehindThePaper https://t.co/jctEtrCYm1

A therapy targeting the acidic environment of cancer cells may improve immunotherapy, according to results presented at the AACR-NCI-EORTC Conference on Molecular Targets and Cancer Therapeutics: https://t.co/BRD8Z2D5cK #Targets21

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Latest posts

Python matplotlib: all about fonts

Fonts output into pdf as text, not shape, to be recognized in Illustrator: Change fonts style for all, change the default: Change fonts style for labels, tick marks, and titles: (for each plot, not changing the default) Change legend font style: (for each plot, not changing the default) Source:https://jonathansoma.com/lede/data-studio/matplotlib/exporting-from-matplotlib-to-open-in-adobe-illustrator/https://stackoverflow.com/questions/20753782/default-fonts-in-seaborn-statistical-data-visualization-in-ipythonhttps://stackoverflow.com/questions/47112522/matplotlib-how-to-set-legends-font-typehttps://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.legend.html

Unix rearrange columns

FS and OFS specify the input/output separator Source:https://unix.stackexchange.com/questions/344541/easiest-way-to-rearrange-columns-and-manipulate-text-file

Liftover bam files

The most straightforward way is using CrossMap. Taking from hg19 to hg38 as example: genome liftover chain files can be downloaded here: http://hgdownload.cse.ucsc.edu/goldenpath/hg19/liftOver/ (change according to your needs) It is suggested to always use ‘-a’ option according to the CrossMap website. Source:http://crossmap.sourceforge.net/#convert-bam-cram-sam-format-files

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